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In recent decades, a phenomenon of grouped death of unknown etiology has been observed in the two Nothofagus species with the widest distribution in the forests of North Patagonia: N. In this context, the endophytic mycobiome of trees plays an important role as a recent object of study and integration in interpretations of forest health. This gave rise to a concept that is increasingly used to evaluate these phenomena, which is that of complex diseases. The causes have been investigated without, in many cases, revealing a primary cause of the deterioration. Temperate forests have been threatened, in recent decades, by events of death and decay throughout the globe. Potential disease management strategies are also outlined. Taxonomy, phylogeny, geographical distribution, host range and disease resistance, life cycle, and etiology of these pathogens areĭiscussed. A major threat for eucalypt plantations worldwide is Myrtle rust caused by Austropuccinia psidii. The many threats to eucalypt plantations are Mycosphaerella leaf blotch or disease (MLD) caused by Mycosphaerella species,Ĭeratocystis wilt caused mostly by Ceratocystis fimbriata, and Teratosphaeria stem canker caused by Teratosphaeria zuluensis and Pathogens, most of which are often cryptic or latent species that escape detection methods and common quarantine measures. The worldwide eucalypt plantation and economy is, however, threatened by eucalypt Planted eucalypts globally surpasses 20 million hectares, primarily for the production of pulp, energy, and timber, augmenting theĭeclining productivity of native forests.
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They form the basis of plantation forestry industries on multipleĬontinents where they provide a source of timber, fuel, energy, fiber, and industrial and medicinal oils. Species of Eucalyptus (Myrtaceae) are considered native to Australia, Tasmania, New Guinea, Timor, Philippines, and Indonesia,īut are planted worldwide, particularly in large-scale plantations. It also highlights some potential pitfalls in subsequent data analyses when using a technology with relatively short read lengths. The study demonstrates that semiconductor sequencing is an ideal strategy for environmental sequencing of fungal communities. The community was dominated by Ascomycota, and particularly by families in the Dothidiomycetes that harbor well-known plant pathogens. Database filtering had a small, but statistically significant, effect on the assignment of sequences to reference sequences. 48 families between least and most stringent filters).
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Sequence similarity cutoff values only had a marginal effect on the identified family numbers, whereas different sequence quality filters had a large effect (89 vs. We determined the impact of various analysis parameters on the interpretation of the results, namely different sequence quality parameter settings, different sequence similarity cutoffs for clustering and filtering of databases for removal of sequences with incomplete taxonomy.
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In this study we sequenced the internal transcribed spacer 1 (ITS1) nuclear encoded ribosomal RNA of the endophytic community of the economically important tree, Eucalyptus grandis, from South Africa using the Ion Torrent Personal Genome Machine (PGM).
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One of the promising new technologies, namely semiconductor sequencing, has thus far not been used in fungal diversity assessments. The developments in next generation sequencing technologies are, however, starting to reveal the true extent of fungal diversity. This is especially true for endophytic communities of fungi living in healthy plant tissue. The Kingdom Fungi adds substantially to the diversity of life, but due to their cryptic morphology and lifestyle, tremendous diversity, paucity of formally described specimens, and the difficulty in isolating environmental strains into culture, fungal communities are difficult to characterize.
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